///////////////////////////////////////////////////////////////////////////////////
//FindExt.Script												
//This script will add an external contour to a selected dataset				
//based on the index # specified in the variable "Store.StringAt.Dataset"		
//Created by Benjamin Pollard, MS, DABR (TPSWiki.com, benjpollard@gmail.com, 2018)	
///////////////////////////////////////////////////////////////////////////////////


//Select the dataset index # that you wish to contour (Primary = 0, secondary #1=1, etc)
//You can also instead use a specific name to select the dataset.
Store.StringAt.Dataset=VolumeList.#"#1".Name;


//If the contour already exists, then delete it.
RoiList.Current="Ext2";
Store.StringAt.Ext2ROICheck = RoiList.Current.Name;
IF.RoiList.Current.Name.STRINGEQUALTO.#"#Ext2".THEN={
    RoiList.#"Ext2".Destroy=1;
};


//Create and name ROI to be used for autocontour
CreateNewROI = "Add Region Of Interest";
RoiList.Current.Name = "Ext2";


//Set the new ROI to the dataset specified by the index number above.
RoiList.Current.VolumeName=Store.StringAt.Dataset;


//Set max and min autocontour thresholds
RoiList.Current.AutoLower = "200";
RoiList.Current.AutoUpper = "4096";

        
//Unnecessary, but you may set the autocontour bounding box location
RoiList.Current.ApplyBoundingBox = 1;
//RoiList.Current.BoundingBox.DisplayXOrigin = "-60";
RoiList .Current.BoundingBox.DisplayYOrigin = TrialList.Current.CouchRemovalYCoordinate;//This can be a number too.
//RoiList.Current.BoundingBox.DisplayZOrigin = "0";
//RoiList.Current.BoundingBox.Size.X = "128";
//RoiList.Current.BoundingBox.Size.Y = "128";
//RoiList.Current.BoundingBox.Size.Z = "38.0999";


//Perform the autocontour
RoiList.Current.AutoContourROI = "Current Region Of Interest";

        
//Clean ROI example
RoiList.Current.CurveMinArea = "100";
RoiList.Current.CurveOverlapMinimum = "88";
RoiList.Current.Clean = "Rescan";
RoiList.Current.CleanAndDelete = "Delete Curves";

//Reassign contour to primary dataset - This method requires manually clicking on a pop-up. 
//There may be ways to get around this like copying/growing the 
//RoiList .Current .VolumeName = VolumeList.#"#0".Name;


//Display external contour
RoiList.Current.Display2dWithMeshCheck = "Both";
RoiList.Current.Color = "blue";


//Clear variable(s)
Store.FreeAt.Dataset="";


Root.Store.StringAt.Test="hello";
Root.Store.FreeAt.Test ="";